Manuscript figures

To reproduce the figures from the manuscript:

1. make sure that you have make installed.

2. download the input files from zenodo: https://zenodo.org/record/7157677

3. specify the location of the input files and run the make command with the figure you want to reproduce, e.g.:

   export DATA_DIR=</path/to/zenodo/files>
   make Figure3a
   

Check the file MakefileFigures to see which figures can be plotted.